Nykter, Matti : rechercher sur Z-Library

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1

Classifieds

Lin, Jake, Kreisberg, Richard, Kallio, Aleksi, Dudley, Aimée M, Nykter, Matti, Shmulevich, Ilya, May, Patrick, Autio, Reija

Journal:

JOM Journal of the Minerals, Metals and Materials Society

Année:

2014

Langue:

english

Fichier:

PDF, 318 KB

english, 2014

2

Meet a member

Lin, Jake, Kreisberg, Richard, Kallio, Aleksi, Dudley, Aimée M, Nykter, Matti, Shmulevich, Ilya, May, Patrick, Autio, Reija

Journal:

JOM Journal of the Minerals, Metals and Materials Society

Année:

2014

Langue:

english

Fichier:

PDF, 359 KB

english, 2014

3

Laminin α5 substrates promote survival, network formation and functional development of human pluripotent stem cell-derived neurons in vitro

Hyysalo, Anu, Ristola, Mervi, Mäkinen, Meeri E.-L., Häyrynen, Sergei, Nykter, Matti, Narkilahti, Susanna

Journal:

Stem Cell Research

Année:

2017

Langue:

english

Fichier:

PDF, 4.06 MB

english, 2017

4

Cytokeratin-supervised deep learning for automatic recognition of epithelial cells in breast cancers stained for ER, PR, and Ki-67

Valkonen, Mira, Isola, Jorma, Isola, Jorma, Ylinen, Onni, Muhonen, Ville, Saxlin, Anna, Tolonen, Teemu, Nykter, Matti, Ruusuvuori, Pekka

Journal:

IEEE Transactions on Medical Imaging

Année:

2019

Langue:

english

Fichier:

PDF, 8 KB

english, 2019

5

Integrative genomic characterization and a genomic staging system for gastrointestinal stromal tumors

Antti Ylipää, Kelly K. Hunt, Jilong Yang, Alexander J. F. Lazar, Keila E. Torres, Dina C. Lev, Matti Nykter, Raphael E. Pollock, Jonathan Trent, Wei Zhang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 568 KB

english, 2011

6

Differential gene expression in non-malignant tumour microenvironment is associated with outcome in follicular lymphoma patients treated with rituximab and CHOP

Antti Harjunpää, Minna Taskinen, Matti Nykter, Marja-Liisa Karjalainen-Lindsberg, Heidi Nyman, Outi Monni, Samuli Hemmer, Olli Yli-Harja, Sampsa Hautaniemi, Seppo Meri, Sirpa Leppä

Journal:

British Journal of Haematology

Année:

2006

Langue:

english

Fichier:

PDF, 715 KB

english, 2006

7

A Data Integration Framework for Prediction of Transcription Factor Targets : A BCL6 Case Study

Matti Nykter, Harri Lähdesmäki, Alistair Rust, Vesteinn Thorsson, Ilya Shmulevich

Journal:

Annals of the New York Academy of Sciences

Année:

2009

Langue:

english

Fichier:

PDF, 375 KB

english, 2009

8

Simulation of microarray data with realistic characteristics

Matti Nykter, Tommi Aho, Miika Ahdesmäki, Pekka Ruusuvuori, Antti Lehmussola, Olli Yli-Harja

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 2.60 MB

english, 2006

9

Function of C/EBPδ in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals

Litvak, Vladimir, Ramsey, Stephen A, Rust, Alistair G, Zak, Daniel E, Kennedy, Kathleen A, Lampano, Aaron E, Nykter, Matti, Shmulevich, Ilya, Aderem, Alan

Journal:

Nature Immunology

Année:

2009

Langue:

english

Fichier:

PDF, 586 KB

english, 2009

10

Integrated Analyses Identify a Master MicroRNA Regulatory Network for the Mesenchymal Subtype in Serous Ovarian Cancer

Yang, Da, Sun, Yan, Hu, Limei, Zheng, Hong, Ji, Ping, Pecot, Chad V., Zhao, Yanrui, Reynolds, Sheila, Cheng, Hanyin, Rupaimoole, Rajesha, Cogdell, David, Nykter, Matti, Broaddus, Russell, Rodriguez-Ag

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 11.59 MB

english, 2013

11

Transcriptome and small RNA deep sequencing reveals deregulation of miRNA biogenesis in human glioma

Moore, Lynette M, Kivinen, Virpi, Liu, Yuexin, Annala, Matti, Cogdell, David, Liu, Xiuping, Liu, Chang-Gong, Sawaya, Raymond, Yli-Harja, Olli, Shmulevich, Ilya, Fuller, Gregory N, Zhang, Wei, Nykter,

Journal:

The Journal of Pathology

Année:

2013

Langue:

english

Fichier:

PDF, 483 KB

english, 2013

12

Gene-pair expression signatures reveal lineage control

Heinäniemi, Merja, Nykter, Matti, Kramer, Roger, Wienecke-Baldacchino, Anke, Sinkkonen, Lasse, Zhou, Joseph Xu, Kreisberg, Richard, Kauffman, Stuart A, Huang, Sui, Shmulevich, Ilya

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2013

13

Next generation sequencing applications in cancer research

Zhang, Wei, Nykter, Matti, Chen, Kexin

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 333 KB

english, 2013

14

Karyotypically abnormal human ESCs are sensitive to HDAC inhibitors and show altered regulation of genes linked to cancers and neurological diseases

Lund, Riikka J., Emani, Maheswara Reddy, Barbaric, Ivana, Kivinen, Virpi, Jones, Mark, Baker, Duncan, Gokhale, Paul, Nykter, Matti, Lahesmaa, Riitta, Andrews, Peter W.

Journal:

Stem Cell Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.28 MB

english, 2013

15

POMO - PlottingOmicsanalysis results for Multiple Organisms

Lin, Jake, Kreisberg, Richard, Kallio, Aleksi, Dudley, Aimée M, Nykter, Matti, Shmulevich, Ilya, May, Patrick, Autio, Reija

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 875 KB

english, 2013

16

Characterization of aberrant pathways across human cancers

Antti Ylipää,Olli Yli-Harja,Wei Zhang,Matti Nykter

Journal:

BMC Systems Biology

Année:

2013

Langue:

english

Fichier:

PDF, 3.94 MB

english, 2013

17

Integrated Analyses Identify a Master MicroRNA Regulatory Network for the Mesenchymal Subtype in Serous Ovarian Cancer

Yang, Da, Sun, Yan, Hu, Limei, Zheng, Hong, Ji, Ping, Pecot, Chad V., Zhao, Yanrui, Reynolds, Sheila, Cheng, Hanyin, Rupaimoole, Rajesha, Cogdell, David, Nykter, Matti, Broaddus, Russell, Rodriguez-Ag

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 60 KB

english, 2013

18

Cancer genome sequencing: Understanding malignancy as a disease of the genome, its conformation, and its evolution

Patel, Lalit R., Nykter, Matti, Chen, Kexin, Zhang, Wei

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.47 MB

english, 2013

19

MicroRNA Expression Profile of Primary Prostate Cancer Stem Cells as a Source of Biomarkers and Therapeutic Targets

Rane, Jayant K., Scaravilli, Mauro, Ylipää, Antti, Pellacani, Davide, Mann, Vincent M., Simms, Matthew S., Nykter, Matti, Collins, Anne T., Visakorpi, Tapio, Maitland, Norman J.

Journal:

European Urology

Année:

2015

Langue:

english

Fichier:

PDF, 712 KB

english, 2015

20

Critical Networks Exhibit Maximal Information Diversity in Structure-Dynamics Relationships

Nykter, Matti, Price, Nathan D., Larjo, Antti, Aho, Tommi, Kauffman, Stuart A., Yli-Harja, Olli, Shmulevich, Ilya

Journal:

Physical Review Letters

Année:

2008

Langue:

english

Fichier:

PDF, 213 KB

english, 2008

21

[IEEE 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Lyon, France (2007.08.22-2007.08.26)] 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Microarray Simulator as Educational Tool

Ruusuvuori, Pekka, Nykter, Matti, Makiraatikka, Eeva, Lehmussola, Antti, Korpelainen, Tomi, Erkkila, Timo, Yli-Harja, Olli

Année:

2007

Langue:

english

Fichier:

PDF, 223 KB

english, 2007

22

Microarray analysis of differentially expressed genes in ovarian and fallopian tube epithelium from risk-reducing salpingo-oophorectomies

Veskimäe, Kristina, Staff, Synnöve, Tabaro, Francesco, Nykter, Matti, Isola, Jorma, Mäenpää, Johanna

Journal:

Genes, Chromosomes and Cancer

Année:

2015

Langue:

english

Fichier:

PDF, 346 KB

english, 2015

23

RecurrentLRP1-SNRNP25andKCNMB4-CCND3fusion genes promote tumor cell motility in human osteosarcoma

Yang, Jilong, Annala, Matti, Ji, Ping, Wang, Guowen, Zheng, Hong, Codgell, David, Du, Xiaoling, Fang, Zhiwei, Sun, Baocun, Nykter, Matti, Chen, Kexin, Zhang, Wei

Journal:

Journal of Hematology & Oncology

Année:

2014

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2014

24

Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression

Turner, Kristen M., Sun, Youting, Ji, Ping, Granberg, Kirsi J., Bernard, Brady, Hu, Limei, Cogdell, David E., Zhou, Xinhui, Yli-Harja, Olli, Nykter, Matti, Shmulevich, Ilya, Yung, W. K. Alfred, Fuller

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2015

25

MiR-1247-5p is overexpressed in castration resistant prostate cancer and targets MYCBP2

Scaravilli, Mauro, Porkka, Kati P., Brofeldt, Anniina, Annala, Matti, Tammela, Teuvo LJ., Jenster, Guido W., Nykter, Matti, Visakorpi, Tapio

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 387 KB

english, 2015

26

Ageing-associated changes in the human DNA methylome: genomic locations and effects on gene expression

Marttila, Saara, Kananen, Laura, Häyrynen, Sergei, Jylhävä, Juulia, Nevalainen, Tapio, Hervonen, Antti, Jylhä, Marja, Nykter, Matti, Hurme, Mikko

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 929 KB

english, 2015

27

Computational Methods for Estimation of Cell Cycle Phase Distributions of Yeast Cells

Niemistö, Antti, Nykter, Matti, Aho, Tommi, Jalovaara, Henna, Marjanen, Kalle, Ahdesmäki, Miika, Ruusuvuori, Pekka, Tiainen, Mikko, Linne, Marja-Leena, Yli-Harja, Olli

Journal:

EURASIP Journal on Bioinformatics and Systems Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2007

28

Construction of therapeutically relevant human prostate epithelial fate map by utilising miRNA and mRNA microarray expression data

Rane, Jayant K, Ylipää, Antti, Adamson, Rachel, Mann, Vincent M, Simms, Matthew S, Collins, Anne T, Visakorpi, Tapio, Nykter, Matti, Maitland, Norman J

Journal:

British Journal of Cancer

Année:

2015

Langue:

english

Fichier:

PDF, 574 KB

english, 2015

29

Twist predicts poor outcome of patients with astrocytic glioma

Nordfors, Kristiina, Haapasalo, Joonas, Mäkelä, Katri, Granberg, Kirsi J, Nykter, Matti, Korja, Miikka, Paavonen, Timo, Haapasalo, Hannu, Soini, Ylermi

Journal:

Journal of Clinical Pathology

Année:

2015

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2015

30

[IEEE 2015 23rd European Signal Processing Conference (EUSIPCO) - Nice, France (2015.8.31-2015.9.4)] 2015 23rd European Signal Processing Conference (EUSIPCO) - Mapping dynamical states to structural classes for Boolean networks using a classification algorithm

Sarbu, Septimia, Shmulevich, Ilya, Yli-Harja, Olli, Nykter, Matti, Kesseli, Juha

Année:

2015

Langue:

english

Fichier:

PDF, 158 KB

english, 2015

31

Integrated clinical, whole-genome, and transcriptome analysis of multisampled lethal metastatic prostate cancer

Bova, G. Steven, Kallio, Heini M.L., Annala, Matti, Kivinummi, Kati, Högnäs, Gunilla, Häyrynen, Sergei, Rantapero, Tommi, Kivinen, Virpi, Isaacs, William B., Tolonen, Teemu, Nykter, Matti, Visakorpi,

Journal:

Molecular Case Studies

Année:

2016

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2016

32

Expressional profiling of prostate cancer risk SNPs at 11q13.5 identifies DGAT2 as a new target gene

Nurminen, Riikka, Rantapero, Tommi, Wong, Swee C., Fischer, Daniel, Lehtonen, Rainer, Tammela, Teuvo L.J., Nykter, Matti, Visakorpi, Tapio, Wahlfors, Tiina, Schleutker, Johanna

Journal:

Genes, Chromosomes and Cancer

Année:

2016

Langue:

english

Fichier:

PDF, 152 KB

english, 2016

33

Bone morphogenetic protein 4 regulates microRNA expression in breast cancer cell lines in diverse fashion

Alarmo, Emma-Leena, Havunen, Riikka, Häyrynen, Sergei, Penkki, Sanna, Ketolainen, Johanna, Nykter, Matti, Kallioniemi, Anne

Journal:

Genes, Chromosomes and Cancer

Année:

2016

Langue:

english

Fichier:

PDF, 449 KB

english, 2016

34

Epigenetically altered miR-193b targets cyclin D1 in prostate cancer

Kaukoniemi, Kirsi M., Rauhala, Hanna E., Scaravilli, Mauro, Latonen, Leena, Annala, Matti, Vessella, Robert L., Nykter, Matti, Tammela, Teuvo L. J., Visakorpi, Tapio

Journal:

Cancer Medicine

Année:

2015

Langue:

english

Fichier:

PDF, 491 KB

english, 2015

35

Genome-wide repression of eRNA and target gene loci by the ETV6-RUNX1 fusion in acute leukemia

Teppo, Susanna, Laukkanen, Saara, Liuksiala, Thomas, Nordlund, Jessica, Oittinen, Mikko, Teittinen, Kaisa J, Grönroos, Toni, St-Onge, Pascal, Sinnett, Daniel, Syvänen, Ann-Christine, Nykter, Matti, Vi

Journal:

Genome Research

Année:

2016

Langue:

english

Fichier:

PDF, 777 KB

english, 2016

36

Whole-exome sequencing of Finnish hereditary breast cancer families

Määttä, Kirsi, Rantapero, Tommi, Lindström, Anna, Nykter, Matti, Kankuri-Tammilehto, Minna, Laasanen, Satu-Leena, Schleutker, Johanna

Journal:

European Journal of Human Genetics

Année:

2016

Langue:

english

Fichier:

PDF, 1.74 MB

english, 2016

37

[IEEE 2016 IEEE International Conference on Image Processing (ICIP) - Phoenix, AZ, USA (2016.9.25-2016.9.28)] 2016 IEEE International Conference on Image Processing (ICIP) - Benchmarking of algorithms for 3D tissue reconstruction

Kartasalo, Kimmo, Latonen, Leena, Visakorpi, Tapio, Nykter, Matti, Ruusuvuori, Pekka

Année:

2016

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2016

38

Virtual cell imaging: A review on simulation methods employed in image cytometry

Ulman, Vladimír, Svoboda, David, Nykter, Matti, Kozubek, Michal, Ruusuvuori, Pekka

Journal:

Cytometry Part A

Année:

2016

Langue:

english

Fichier:

PDF, 548 KB

english, 2016

39

Overexpression of PTP4A3 in ETV6-RUNX1 acute lymphoblastic leukemia

Grönroos, Toni, Teppo, Susanna, Mehtonen, Juha, Laukkanen, Saara, Liuksiala, Thomas, Nykter, Matti, Heinäniemi, Merja, Lohi, Olli

Journal:

Leukemia Research

Année:

2017

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2017

40

Analysis of spatial heterogeneity in normal epithelium and preneoplastic alterations in mouse prostate tumor models

Valkonen, Mira, Ruusuvuori, Pekka, Kartasalo, Kimmo, Nykter, Matti, Visakorpi, Tapio, Latonen, Leena

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 2.32 MB

english, 2017

41

Metastasis detection from whole slide images using local features and random forests

Valkonen, Mira, Kartasalo, Kimmo, Liimatainen, Kaisa, Nykter, Matti, Latonen, Leena, Ruusuvuori, Pekka

Journal:

Cytometry Part A

Année:

2017

Langue:

english

Fichier:

PDF, 825 KB

english, 2017

42

Comparative analysis of osteoblast gene expression profiles and Runx2 genomic occupancy of mouse and human osteoblasts in vitro

Tarkkonen, Kati, Hieta, Reija, Kytölä, Ville, Nykter, Matti, Kiviranta, Riku

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.77 MB

english, 2017

43

Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas

Lehtinen, Birgitta, Raita, Annina, Kesseli, Juha, Annala, Matti, Nordfors, Kristiina, Yli-Harja, Olli, Zhang, Wei, Visakorpi, Tapio, Nykter, Matti, Haapasalo, Hannu, Granberg, Kirsi J.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.92 MB

english, 2017

44

Concordance of Circulating Tumor DNA and Matched Metastatic Tissue Biopsy in Prostate Cancer

Wyatt, Alexander W., Annala, Matti, Aggarwal, Rahul, Beja, Kevin, Feng, Felix, Youngren, Jack, Foye, Adam, Lloyd, Paul, Nykter, Matti, Beer, Tomasz M., Alumkal, Joshi J., Thomas, George V., Reiter, Ro

Journal:

JNCI Journal of the National Cancer Institute

Année:

2017

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2017

45

Circulating tumor DNA reveals clinically-actionable somatic genome of metastatic bladder cancer

Vandekerkhove, Gillian R, Todenhöfer, Tilman, Annala, Matti, Struss, Werner J, Wong, Amanda, Beja, Kevin, Ritch, Elie, Brahmbhatt, Sonal, Volik, Stas, Hennenlotter, Jörg, Nykter, Matti, Chi, Kim N., N

Journal:

Clinical Cancer Research

Année:

2017

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2017

46

The expression of AURKA is androgen regulated in castration-resistant prostate cancer

Kivinummi, Kati, Urbanucci, Alfonso, Leinonen, Katri, Tammela, Teuvo L. J., Annala, Matti, Isaacs, William B., Bova, G. Steven, Nykter, Matti, Visakorpi, Tapio

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2017

47

[IEEE 2017 IEEE International Conference on Computer Vision Workshop (ICCVW) - Venice, Italy (2017.10.22-2017.10.29)] 2017 IEEE International Conference on Computer Vision Workshops (ICCVW) - Dual Structured Convolutional Neural Network with Feature Augmentation for Quantitative Characterization of Tissue Histology

Valkonen, Mira, Kartasalo, Kimmo, Liimatainen, Kaisa, Nykter, Matti, Latonen, Leena, Ruusuvuori, Pekka

Année:

2017

Langue:

english

Fichier:

PDF, 888 KB

english, 2017

48

Whole-exome sequencing identifies germline mutation in TP53 and ATRX in a child with genomically aberrant AT/RT and her mother with anaplastic astrocytoma

Nordfors, Kristiina, Haapasalo, Joonas, Afyounian, Ebrahim, Tuominen, Joonas, Annala, Matti, Häyrynen, Sergei, Karhu, Ritva, Helén, Pauli, Lohi, Olli, Nykter, Matti, Haapasalo, Hannu, Granberg, Kirsi

Journal:

Molecular Case Studies

Année:

2018

Langue:

english

Fichier:

PDF, 10.03 MB

english, 2018

49

Computational characterization of suppressive immune microenvironments in glioblastoma

Luoto, Suvi, Hermelo, Ismaïl, Vuorinen, Elisa M, Hannus, Paavo, Kesseli, Juha, Nykter, Matti, Granberg, Kirsi J

Journal:

Cancer Research

Année:

2018

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2018

50

Balance between Noise and Information Flow Maximizes Set Complexity of Network Dynamics

Mäki-Marttunen, Tuomo, Kesseli, Juha, Nykter, Matti, Abbott, Derek

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2013